Skip to main content
Ctrl+K
sctrial 0.3.3 documentation - Home sctrial 0.3.3 documentation - Home
  • GitHub
  • PyPI
  • GitHub
  • PyPI

Section Navigation

Getting Started

  • Installation
  • Quickstart
  • Concepts and Methods

Tutorials

  • Tutorials
    • Immune Profiling of COVID-19 Severity: A Cross-Sectional Analysis
    • Immunotherapy Response in Melanoma: Longitudinal Single-Cell Analysis
    • Vaccine Response Analysis
    • Scalability Analysis

API Reference

  • API Reference
    • Trial Design
    • Statistical Methods
    • Scoring and Preprocessing
    • Plotting
    • Datasets
    • Workflow and Analysis
    • Benchmark Simulation
    • Utilities and Validation

Guides

  • Best Practices Guide
  • Troubleshooting Guide
  • Frequently Asked Questions
  • Performance Guide
  • Changelog
  • Overview: module code

All modules for which code is available

  • sctrial.adata_tools
  • sctrial.analysis
  • sctrial.benchmark.orchestrator
  • sctrial.benchmark.simulator
  • sctrial.convenience
  • sctrial.datasets
  • sctrial.design
  • sctrial.plotting
  • sctrial.preprocessing
  • sctrial.scoring
  • sctrial.stats.abundance
  • sctrial.stats.bayes
  • sctrial.stats.comparisons
  • sctrial.stats.cv
  • sctrial.stats.diagnostics
  • sctrial.stats.did
  • sctrial.stats.effect_size
  • sctrial.stats.gsea
  • sctrial.stats.heterogeneity
  • sctrial.stats.mixed_effects
  • sctrial.stats.module_scores
  • sctrial.stats.power
  • sctrial.stats.pseudobulk
  • sctrial.stats.sensitivity
  • sctrial.stats.simulation
  • sctrial.stats.summary
  • sctrial.stats.survival
  • sctrial.stats.timeseries
  • sctrial.utils
  • sctrial.validation
  • sctrial.workflow

© Copyright 2026, Omar Lab, Cedars-Sinai Medical Center.